_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-23
 Query name: gi|1041103057|ref|XP_017274552.1| PREDICTED: selenoprotein O isoform X1 [Kryptolebias marmoratus]
 Query range: 565-691  (total 691)

 Target: /data/www-rg/seblastian_results/902975724/tempfiles/temptarget.fasta
 Chromosome: OMLM01015002.1:subseq_0,33963_ Strand: -
 Positions:
 -Exon 1  32845        33006
 -Exon 2  32365        32586

 Redox box: YES

Query   YRKRLARELEGQSDVQATQEERVRVMDSTNPRVVLRNYIAQNAIEAAENSDFSE <---Intron---> VQRVLKVLQKPFSSQPGLELPAWVGGHGTA
        /||||||||||| ||||||/||||||||||||||||||||||||||||| |||| <   258bp    > ||||||||/|||||||||||||||||  | 
Target  HRKRLARELEGQCDVQATQQERVRVMDSTNPRVVLRNYIAQNAIEAAENGDFSE                VQRVLKVLKKPFSSQPGLELPAWVGGGSTT
        caaccgcgcggctggcgaccgagagagaaaccggcaatagcagaggggaggttg                gccgcagtaactttccgcgccgtggggaaa
        agagtcgatagagataccaaagtgttagcacgtttgaatcaactaccaagatca                tagttattaactccacgtatccgtggggcc
        cggtgtcgggcgttggcgggggggggccccttggcgcctcgtaagttgtacctg                cggcagtgggtttggttggttgggcacccc
                                                                                                            

Query   SQAERDEGEEQQHE-ASASAARNPVPYNSRPPAWAQEICVTUSS
         | |||| |||| | ||/||||| |||/|/||||| ||||||||
Target  EQGERDEAEEQQQEAASSSAARNSVPYDSKPPAWAHEICVTUSS
        gcggagggggcccgggtttggaatgctgaaccgtgcgatgattt
        aagagaacaaaaaacccccccgactcaagacccgcaatgtcgcc
        agaggtagggaaaacatatacatttctccgtatgctactcaaga
                                                 *  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 437 ; UGA-SECIS: 443

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = OMLM01015002.1:subseq_0,33963_ Strand = - Positions = 31927 - 31845
 Found by:  Infernal (score=25.84) Covels (score=23.57)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -16.57

         ..(((((((........(((((((((((((((................)))))))))))))))............)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu---u-uuucaugaccggc
         ...((({((((((....{[[{(({(((((((..................)))))))}))}]]}.......)-)))))})))...
 target  UUAGUGUUAGCUAUUAAUGACGAUUCAGACAACAAGUCCUUCAGUGACCUGUCUGACUCUGACAAACUGUU-GGUUGUCACCUC
                          ****            ^^                        ****